PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_BFDD733CB.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 780aa    MW: 89683.8 Da    PI: 7.0653
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_BFDD733CB.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR150.85.6e-16172253191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fY+++A  +GF  r+ +++k+      +k ++ C+++gk +++++   +++r+ ++   +C+ak+ vk++ +++we t +++eHnH+
  Traes_1AL_BFDD733CB.2 172 RFYSTHAMLTGFAARRGTNYKR------KKFHLLCNRSGKLKPTQDL--QRKRKVNVLGSQCQAKVIVKLH-NEQWEFTGVKHEHNHP 250
                            5********************9......4678***********9988..88888889999**********9.9*************** PP

                   FAR1  89 lap 91 
                            l+p
  Traes_1AL_BFDD733CB.2 251 LCP 253
                            *97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-13172253IPR004330FAR1 DNA binding domain
PfamPF105511.4E-27376468IPR018289MULE transposase domain
PROSITE profilePS509669.124658694IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    Send to blast
MHGCIHQTIA GNRHRALLMQ PISNEYVVMT YQDRAVEPSH SGEGLRVEKE HAGKQANPEG  60
SQQPIGEINQ ENASNGIGTT VQGLLADMLH KQTNSVDPTV QHAEEQDQLH DVTEGHELCS  120
NDTSSGSDAG SSSGSELDTE LGKCYYPSIE ALENSRPPEV GMKFPTLEDA ERFYSTHAML  180
TGFAARRGTN YKRKKFHLLC NRSGKLKPTQ DLQRKRKVNV LGSQCQAKVI VKLHNEQWEF  240
TGVKHEHNHP LCPSPSLTSF FLDHKYLSSE EKLFLRVLQQ SRVNPRKAMN IFQRMRSNFG  300
NVSSSNEKDM SNSQCVDQWR KENSDVETAL KRFKELELRN LGFSYTMQKD EDNIVRSLFW  360
TDARSRVDYE IFGDFISFST SYSTNRHNMP FTPIIGVNNH GRILVFGCAL LQDQKAETFK  420
WMFQTFLHVM RGKLPKTIII DQDEGMVKAI AEVMPQVRHR LCKFSVMRKA QEMLGAFMAA  480
RGNMNAELHS LVDNSLTEKE FEEGWAVLIE RYDASENEYL RLMWKTRKNW VPVYFQADFY  540
PFVESAEHGE GSNLLFKDNV LPKDRIEKFI EQYERIQEGI VKTEEEDTLQ SATEPAYFSM  600
QPIEKHAARI YTRQIFLRVQ KELYYSTALN AHEIQGGAAY RLEKVFDYEN PEFDRNSFEV  660
LVDPGTHTFK CQCAKFTRDG ILCCHIFRVF TQLGVIEIPA QYIVPRWARE FREERLKEYE  720
EKCSKRTEER KRCVMLLGKM ADIGKGICAD SAKSGCFMLK LDKVQEKLVG ADGQIVLWSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755557.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
TrEMBLW4ZSH80.0W4ZSH8_WHEAT; Uncharacterized protein
STRINGMLOC_67802.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.24e-82FAR1-related sequence 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]